A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
This report has been generated by the ebi-metagenomics/assembly-analysis-pipeline analysis pipeline. For information about how to interpret these results, please see the documentation.
Report
generated on 2025-05-28, 17:57 BST
based on data in:
/hps/nobackup/rdf/metagenomics/service-team/projects/mgnify-asa/work/mbc/17/a4bd452015c1bb7f8e9087b9138d25
General Statistics
| Sample Name | N50 (Kbp) | Assembly Length (Mbp) |
|---|---|---|
| ERZ857107_filtered | 13.9Kbp | 1.3Mbp |
| ERZ857107_renamed | 13.9Kbp | 1.3Mbp |
QUAST
Quality assessment tool for genome assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086
Assembly Statistics
| Sample Name | N50 (Kbp) | L50 (K) | Largest contig (Kbp) | Length (Mbp) |
|---|---|---|---|---|
| ERZ857107_filtered | 13.9Kbp | 0.0K | 60.4Kbp | 1.3Mbp |
| ERZ857107_renamed | 13.9Kbp | 0.0K | 60.4Kbp | 1.3Mbp |
Number of Contigs
This plot shows the number of contigs found for each assembly, broken down by length.
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Group | Software | Version |
|---|---|---|
| ANTISMASH_ANTISMASH | antismash | 8.0.0 |
| antismash database | 8.0.0 | |
| ANTISMASH_JSON_TO_GFF | mgnify-pipelines-toolkit | 1.2.0 |
| ANTISMASH_SUMMARY | mgnify-pipelines-toolkit | 1.0.5 |
| CATPACK_CONTIGS | catpack | 6.0 |
| catpack database | 202501 | |
| CMSEARCHTBLOUTDEOVERLAP | cmsearch_tblout_deoverlap | v0.09 |
| COMBINEDGENECALLER_MERGE | mgnify-pipelines-toolkit | 1.2.0 |
| CONCATENATE_ANTISMASH_GBK | pigz | 2.3.4 |
| CONCATENATE_ANTISMASH_GFFS | python | 3.13.1 |
| CONCATENATE_CMSEARCH_DEOVERLAP | pigz | 2.3.4 |
| CONCATENATE_DBCAN_GFFS | python | 3.13.1 |
| CONCATENATE_DBCAN_HMMOUT | csvtk | 0.31.0 |
| CONCATENATE_DBCAN_OVERVIEW | csvtk | 0.31.0 |
| CONCATENATE_DBCAN_STANDARD_OUT | csvtk | 0.31.0 |
| CONCATENATE_DBCAN_SUBSTRATES | csvtk | 0.31.0 |
| CONCATENATE_EGGNOGMAPPER_ANNOTATIONS | pigz | 2.3.4 |
| CONCATENATE_EGGNOGMAPPER_ORTHOLOGS | pigz | 2.3.4 |
| CONCATENATE_HMMSEARCH_TBLOUT | pigz | 2.3.4 |
| CONCATENATE_INTERPROSCAN_GFFS | python | 3.13.1 |
| CONCATENATE_INTERPROSCAN_TSV | pigz | 2.3.4 |
| CONCATENATE_SANNTIS_GFFS | python | 3.13.1 |
| DBCAN | dbcan | 4.1.4 |
| dbcan database | 4.1.4-V13 | |
| DIAMOND_BLASTP | diamond | 2.1.11 |
| DIAMOND_RHEACHEBI | diamond | 2.1.11 |
| mgnify-pipelines-toolkit | 0.2.1 | |
| uniref90rhea database | 2025_01.2025-04-01.137 | |
| DRAM_DISTILL_PER_ASSEMBLY | dram | 1.3.5 |
| dram databases | 1.3.0 | |
| DRAM_DISTILL_PER_SAMPLESHEET | dram | 1.3.5 |
| dram databases | 1.3.0 | |
| EASEL_ESLSFETCH | easel | 0.49 |
| EGGNOGMAPPER_ANNOTATIONS | eggnog-mapper | 2.1.12 |
| eggnog-mapper database | 5.0.2 | |
| EGGNOGMAPPER_ORTHOLOGS | eggnog-mapper | 2.1.12 |
| eggnog-mapper database | 5.0.2 | |
| EXTRACTCOORDS | mgnify-pipelines-toolkit | 1.2.0 |
| FILTER_ASSEMBLY | seqkit | v2.8.0 |
| FRAGGENESCANRS | FragGeneScanRs | 1.1.0 |
| GENERATEGAF | mgnify-pipelines-toolkit | 1.2.0 |
| GENOMEPROPERTIES | Genome Properties | 2.0 |
| GFF_SUMMARY | mgnify-pipelines-toolkit | 1.2.0 |
| GT_GFF3VALIDATOR | genometools | 1.6.5 |
| HMMSEARCH_KOFAMS | hmmer | 3.4 |
| kofam version | 202503 | |
| INFERNAL_CMSEARCH | Rfam version | 15.0 |
| cmsearch | 1.1.5 | |
| INTERPROSCAN | InterProScan | 5.73-104.0 |
| InterProScan database | 5.73-104.0 | |
| INTERPRO_SUMMARY | csvtk | 0.31.0 |
| tabix | 1.21 | |
| KEGGPATHWAYSCOMPLETENESS | kegg-pathways-completeness | 1.3.0 |
| KEGG_ORTHOLOGS_SUMMARY | biopython | 1.85 |
| csvtk | 0.31.0 | |
| tabix | 1.21 | |
| KRONA_KTIMPORTTEXT | krona | 2.8.1 |
| MERGE_ANTISMASH_JSON | jq | 1.5 |
| MGNIFYPIPELINESTOOLKIT_KRONATXTFROMCATCLASSIFICATION | mgnify-pipelines-toolkit | 1.2.0 |
| MGNIFYPIPELINESTOOLKIT_SUMMARISEGOSLIMS | mgnify-pipelines-toolkit | 1.2.0 |
| OWLTOOLS | golism version | 20160705 |
| owltools | 2024-06-12T00:00:00Z | |
| PFAM_SUMMARY | csvtk | 0.31.0 |
| tabix | 1.21 | |
| PYRODIGAL | pyrodigal | 3.6.3 |
| QUAST | quast | 5.2.0 |
| RENAME_CONTIGS | pyfastax | 2.2.0 |
| python | 3.9.21 | |
| SANNTIS | SanntiS | 0.9.4.1 |
| SANNTIS_SUMMARY | mgnify-pipelines-toolkit | 1.2.0 |
| SEQKIT_FIX | csvtk | 0.31.0 |
| SEQKIT_SEQ_BGC | seqkit | v2.9.0 |
| SEQKIT_SPLIT2 | seqkit | 2.8.0 |
| SUMMARISE_FOR_DRAM_INPUT | python | 3.13.0 |
| TABIX_BGZIP_GO | tabix | 1.2 |
| TABIX_BGZIP_GOSLIM | tabix | 1.2 |
| TABIX_BGZIP_KEGGPATHWAYSCOMPLETENESS | tabix | 1.2 |
| TABIX_BGZIP_KEGGPATHWAYSCOMPLETENESS_PER_CONTIG | tabix | 1.2 |
| TABIX_BGZIP_RHEAANDCHEBI | tabix | 1.2 |
| Workflow | Nextflow | 24.10.3 |
| ebi-metagenomics/assembly-analysis-pipeline | v6.0.0-beta-g0859cda |
ebi-metagenomics/assembly-analysis-pipeline Methods Description
Suggested text and references to use when describing pipeline usage within the methods section of a publication.URL: https://github.com/ebi-metagenomics/assembly-analysis-pipeline
ebi-metagenomics/assembly-analysis-pipeline Workflow Summary
- this information is collected when the pipeline is started.URL: https://github.com/ebi-metagenomics/assembly-analysis-pipeline